Training programme

Workshops are a core element of the HeatDDR Doctoral Network training programme.

Workshops are designed to help Doctoral Candidates build both scientific expertise and essential transferable skills, preparing them for future careers. They include seminars from invited experts, presentations by the students, hands-on training in advanced techniques, and collaborative group activities.

Kick-off meeting : Heat-stress and DNA Damage Response in plants (December 2^nd-3^rd, 2025)

The kick-off meeting took place at the iFZ Research Centre of the Justus-Liebig University. It was organized by Patrick Schäfer (B5-JLU) and Cécile Raynaud (B1-UPSaclay).

The workshop brought together all participants for a full overview of the project’s scientific themes and goals. It was organised around three thematic sessions, each aligned with a Work Package (WP):

WP3 – Cellular and physiological responses to heat stress and DDR
WP4 – Transcriptional regulation of heat stress and DDR response
WP5 – Functional characterization of DDR regulators in heat stress

Each student presented their project and research strategy, answered questions, and engaged in discussion with peers and supervisors. In this setting, students were able to place their work within the wider HeatDDR scientific framework and refine their initial research plans based on the feedback they received.

To know more, check out this article !

Workshop 2 – Plant DNA Damage Response, basic knowledge and imaging techniques.

This workshop will take place in December 2025 at IEB, Olomouc (Czech Republic) and organised by A. Pecinka (IEB) and A. Schnittger (UHAM). The first day will be dedicated to seminars by experts from the DDR working on different models including guest speakers. These seminars will be followed by 3 days of practical courses on DNA damage detection (e.g., live-cell imaging, immuno-detection assays), flow-cytometry-based sample generation and analysis. T. Dobisova (Labdeers s.r.o.) will provide special training in the use of robotics for spreading seeds (Arabidopsis, tomato, barley) for large scale experiments.

Workshop 3 – Systems biology – transcriptomics and epigenomics with training in quantitative biology skills

This workshop will take place around April 2026 in Gent (Belgium). The workshop will offer a combination of seminars, practical courses and computational biology, allowing students to gain insight into state-of-the-art approaches, including single-cell transcriptomics. VIB experts in gene networks and single-cell RNA-Seq will contribute to the training together with international experts and practical courses on wet lab and bioinformatics analysis. The workshop will include training in gene annotation and computational prediction of protein function in crop plants, integration and network analysis of genome-wide datasets.

Workshop 4 – Proteomics and computational biology

In these training sessions (around September 2026 in Szeged, Hungary), students will learn about:

1. Sample preparation workflows and mass spectrometry methods for phosphoproteomics and high-throughput identification of protein complexes by affinity enrichment experiments.

2. Data analysis workflows using leading software platforms, such as MaxQuant and Perseus for statistical evaluation.

3. Computational approaches to determine protein-protein interaction networks and mine bioinformatic databases such as UNIPROT and Gene Ontology terms.

Workshop 5: Plant DNA Damage Response, basic knowledge and imaging techniques.

Industry days with training in outreach/developing a product. This workshop (January 2027) will take place in Royal Holloway (UK). The aim is to make DCs aware of how basic research results can be translated into crops, and familiarise them with breeding as well as with industry’s view on research projects, intellectual property, etc. PO representatives will present their respective companies, challenges faced by breeders, breeding strategies and other innovative strategies for yield improvement such as priming (UNIPV) or chemical genetics (SynSw). The workshop will include an exclusive session on translational research for DCs. The workshop will involve seminars (1 day) and will include a one-day visit to Syngenta facilities (doubled-haploid wheat facility and crop protection chemicals R&D department). Two days will be dedicated to group exercises where participants will reflect on techniques for developing and selling an idea to funders and the public.

Final Symposium – Three-day international meeting, Paris-Saclay (France, September 2028)

During this meeting, the DCs will present their final work. They will be responsible for organising this symposium and inviting external speakers, which will develop transferable skills such as communication and event organisation.